Stem-loop cja-mir-133a-2

Accession

MI0032059

Description

Callithrix jacchus cja-mir-133a-2 precursor miRNA

Sequence

186 reads, 18.0 reads per million, 1 experiments

gcugccguuccuuggaucugggagccaaaugcuuugcuagagcugguaaaauggaaccaaaucgacuguccaauggauUUGGUCCCCUUCAACCAGCUGUagcugugcauugagggcaccaugcggcccggcggc
((((((((((((.......))))))..(((((...((((.(((((((..((.((.((((((((.(........).)))))))).)).))..))))))).))))...)))))..((((........))))))))))

Structure

      guuccuuggaucugggagcca     uuu    g       aa  u  a        g cug 
gcugcc                     aaugc   gcua agcuggu  aa gg accaaauc a   u
||||||                     |||||   |||| |||||||  || || |||||||| |    
cggcgg                     uuacg   cgaU UCGACCA  UU CC UGGUUuag u   c
      ---cccggcguaccacgggag     ugu    G       AC  C  C        g aac 

Annotation confidence Not enough data

Genome context

ref|NC_071446.1|: 55842424-55842557 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-133a-2

Mature cja-miR-133a-3p

• Accession: MIMAT0039529
• Description: Callithrix jacchus cja-miR-133a-3p mature miRNA
• Sequence: 79 - UUGGUCCCCUUCAACCAGCUGU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857