miRBase entry: cja-mir-510a

Stem-loop cja-mir-510a

Accession

MI0032072

Description

Callithrix jacchus cja-mir-510a precursor miRNA

Sequence

ugcgugauugaauauuuaggcuguguucccacucucaggcaugcuauauguguguggugcucuacuccagagaguagcaaucauguauaauuaagggugAUUGAAACCUCUGAGAGUAGAguaacgcaagacacauacuacacaugcagugacauugcagguauuuaguugcaugca
(((((((((((((((((..((.((((...((((.....(((((...((((((((((..((((((((((((((.((..(((((((.(........).)))))))..))))))).)))))))))..)))...))))))).....))))))))))))).)))))))))))))..))))))

Structure

      --           ag  u    ucc    cucag     --cua       ---   gu         -     a  ag       g aua 
ugcgug  auugaauauuu  gc gugu   cacu     gcaug     uaugugu   gug  gcucuacuc cagag gu  caaucau u   a
||||||  |||||||||||  || ||||   ||||     |||||     |||||||   |||  ||||||||| ||||| ||  ||||||| |    
acguac  ugauuuaugga  cg uaca   guga     cguac     auacaca   cgc  ugAGAUGAG GUCUC CA  GUUAgug g   u
      gu           --  u    ---    -----     acauc       gaa   aa         A     -  AA       g aau

Annotation confidence Not enough data

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Genome context

chrX: 134465643-134465819 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cja-mir-510a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-510a

Accession	MIMAT0039542
Description	Callithrix jacchus cja-miR-510a mature miRNA
Sequence	100 - AUUGAAACCUCUGAGAGUAGA - 120
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857