miRBase entry: cja-mir-1258a

Stem-loop cja-mir-1258a

Accession

MI0032076

Description

Callithrix jacchus cja-mir-1258a precursor miRNA

Sequence

gcgccuguagcuuccacgaccuaauccuaacuccugcggacucgcAAGAGUUAGGAUUAGGUCGUGGaagccacaggagc
((.(((((.((((((((((((((((((((((((.((((....)))).)))))))))))))))))))))))).))))).))

Structure

  g     a                        c    g 
gc ccugu gcuuccacgaccuaauccuaacuc ugcg a
|| ||||| |||||||||||||||||||||||| ||||  
cg ggaca cgaaGGUGCUGGAUUAGGAUUGAG Acgc c
  a     c                        A    u

Annotation confidence Not enough data

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Genome context

chr6: 38507622-38507701 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-1258a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-1258a

Accession	MIMAT0039545
Description	Callithrix jacchus cja-miR-1258a mature miRNA
Sequence	46 - AAGAGUUAGGAUUAGGUCGUGG - 67
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857