Stem-loop cja-mir-548n-2

Accession

MI0032082

Description

Callithrix jacchus cja-mir-548n-2 precursor miRNA

Sequence

275 reads, 26.0 reads per million, 1 experiments

ccuucgugauggcuuuaauaguauuagguugaugCAAAAGCAAUUGCGGUUUCUGcauugaaagugauggcAGAAACUGCAGUUACUUUUGcaccaacguaauauauguaagaacaaugcggccggg
((.(((((.((..((((...((((((.((((.((((((((.((((((((((((((((((......))).))))))))))))))).)))))))).)))).))))))...))))..)).)))))..)).

Structure

-  -u     a  gc    aua      g    a        C               -   ga 
 cc  ucgug ug  uuua   guauua guug ugCAAAAG AAUUGCGGUUUCUGc auu  a
 ||  ||||| ||  ||||   |||||| |||| |||||||| ||||||||||||||| |||   
 gg  ggcgu ac  gaau   uauaau caac acGUUUUC UUGACGUCAAAGAcg uag  a
g  cc     a  aa    gua      g    c        A               g   ug 

Annotation confidence High

Genome context

ref|NC_071458.1|: 74481473-74481599 [+]

Mature cja-miR-548n-2-5p

• Accession: MIMAT0061582
• Description: Callithrix jacchus cja-miR-548n-2-5p mature miRNA
• Sequence: 35 - CAAAAGCAAUUGCGGUUUCUG - 55
• Evidence: experimental ; Illumina [1]

Mature cja-miR-548n-3p

• Accession: MIMAT0039550
• Description: Callithrix jacchus cja-miR-548n-3p mature miRNA
• Sequence: 72 - AGAAACUGCAGUUACUUUUG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857