Stem-loop cja-mir-142

Accession

MI0032092

Description

Callithrix jacchus cja-mir-142 precursor miRNA

Literature search

1 open access papers mention cja-mir-142
(2 sentences)

Sequence

3816845 reads, 365294.0 reads per million, 1 experiments

acagugcagucaccCAUAAAGUAGAAAGCACUACUaacagcacuggagggUGUAGUGUUUCCUACUUUAUGGAugaguguacugu
((((((((.(((.(((((((((((.(((((((((...(..(....)..)..))))))))).))))))))))).))).))))))))

Structure

        g   c           A         Uaa ag a 
acagugca uca cCAUAAAGUAG AAGCACUAC   c  c c
|||||||| ||| ||||||||||| |||||||||   |  |  
ugucaugu agu GGUAUUUCAUC UUUGUGAUG   g  g u
        g   A           C         -Ug ga g 

Annotation confidence High

Genome context

ref|NC_071446.1|: 68967214-68967298 [+]

Mature cja-miR-142-5p

• Accession: MIMAT0061584
• Description: Callithrix jacchus cja-miR-142-5p mature miRNA
• Sequence: 15 - CAUAAAGUAGAAAGCACUACU - 35
• Evidence: experimental ; Illumina [1]

Mature cja-miR-142-3p

• Accession: MIMAT0039560
• Description: Callithrix jacchus cja-miR-142-3p mature miRNA
• Sequence: 51 - UGUAGUGUUUCCUACUUUAUGGA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857