Stem-loop cja-mir-3074-2

Accession

MI0032101

Description

Callithrix jacchus cja-mir-3074-2 precursor miRNA

Sequence

7334 reads, 702.0 reads per million, 1 experiments

cgggcuccaagcgggcuugacccCUGUUCCUGCUGAACUGAGCCAgugugcacaaaccaacUGUGUUUCAGCUCAGUAGGCACgggaggcagagcccagggaggccg
(((.((((....((((((..(((((((.((((((((.((((((((((((......))..)))).).))))).)))))))).))))).))..))))))..)))).)))

Structure

   g    aagc      ga  -     U        A     - -    --  gc 
cgg cucc    gggcuu  cc cCUGU CCUGCUGA CUGAG C CAgu  gu  a
||| ||||    ||||||  || ||||| |||||||| ||||| | ||||  ||   
gcc gagg    cccgag  gg gggCA GGAUGACU GACUU G GUca  ca  c
   g    --ga      ac  a     C        C     U U    ac  aa 

Annotation confidence Medium

Genome context

ref|NC_071463.1|: 12279621-12279727 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from cja-mir-3074-2

Mature cja-miR-3074-5p

• Accession: MIMAT0039568
• Description: Callithrix jacchus cja-miR-3074-5p mature miRNA
• Sequence: 24 - CUGUUCCUGCUGAACUGAGCCA - 45
• Evidence: experimental ; Illumina [1]

Mature cja-miR-3074-2-3p

• Accession: MIMAT0061586
• Description: Callithrix jacchus cja-miR-3074-2-3p mature miRNA
• Sequence: 62 - UGUGUUUCAGCUCAGUAGGCAC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857