miRBase entry: cja-mir-3074-1

Stem-loop cja-mir-3074-1

Accession

MI0032102

Description

Callithrix jacchus cja-mir-3074-1 precursor miRNA

Sequence

gggcucgacuccugUUCCUGCUGAACUGAGCCAGUguguaaaaugagaacugauaucagcucaguaggcaccggagggcgggucc
(((((((.((((.((.((((((((.((((..((((.............))))...)))).)))))))).)).))))..)))))))

Structure

       -a    u  U        A    -GC    gugua 
gggcucg  cucc gU CCUGCUGA CUGA   CAGU     a
|||||||  |||| || |||||||| ||||   ||||     a
ccugggc  gagg ca ggaugacu gacu   guca     a
       gg    c  c        c    aua    agagu

Annotation confidence Not enough data

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Genome context

chr1: 78275744-78275828 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cja-mir-3074-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-3074

Accession	MIMAT0039568
Description	Callithrix jacchus cja-miR-3074 mature miRNA
Sequence	15 - UUCCUGCUGAACUGAGCCAGU - 35
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857