Stem-loop cja-mir-3074-1

Accession

MI0032102

Description

Callithrix jacchus cja-mir-3074-1 precursor miRNA

Sequence

7596 reads, 727.0 reads per million, 1 experiments

gggcucgacucCUGUUCCUGCUGAACUGAGCCAguguguaaaaugagaacuGAUAUCAGCUCAGUAGGCACCGgagggcgggucc
(((((((.((((.((.((((((((.((((..((((.............))))...)))).)))))))).)).))))..)))))))

Structure

       -a    U  U        A    -GC    gugua 
gggcucg  cucC GU CCUGCUGA CUGA   CAgu     a
|||||||  |||| || |||||||| ||||   ||||     a
ccugggc  gagG CA GGAUGACU GACU   Guca     a
       gg    C  C        C    AUA    agagu 

Annotation confidence High

Genome context

ref|NC_071442.1|: 77750865-77750949 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cja-mir-3074-1

Mature cja-miR-3074-5p

• Accession: MIMAT0039568
• Description: Callithrix jacchus cja-miR-3074-5p mature miRNA
• Sequence: 12 - CUGUUCCUGCUGAACUGAGCCA - 33
• Evidence: experimental ; Illumina [1]

Mature cja-miR-3074-1-3p

• Accession: MIMAT0061587
• Description: Callithrix jacchus cja-miR-3074-1-3p mature miRNA
• Sequence: 52 - GAUAUCAGCUCAGUAGGCACCG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857