Stem-loop cja-mir-542

Accession

MI0032103

Description

Callithrix jacchus cja-mir-542 precursor miRNA

Sequence

cucagacaucUCGGGGAUCAUCGUGUCACGAGAuaucacugugcacUUGUGACAGAUUGAUAACUGAaaggucuggg
(((((((...((((..((((...(((((((((.............)))))))))...))))..))))...)))))))

Structure

       auc    GG    UCG         Auauc 
cucagac   UCGG  AUCA   UGUCACGAG     a
|||||||   ||||  ||||   |||||||||     c
gggucug   AGUC  UAGU   ACAGUGUUc     u
       gaa    AA    UAG         acgug 

Annotation confidence Not enough data

Genome context

chrX: 122448592-122448668 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cja-mir-542

Mature cja-miR-542-5p

• Accession: MIMAT0039569
• Description: Callithrix jacchus cja-miR-542-5p mature miRNA
• Sequence: 11 - UCGGGGAUCAUCGUGUCACGAGA - 33
• Evidence: experimental ; Illumina [2]

Mature cja-miR-542-3p

• Accession: MIMAT0039570
• Description: Callithrix jacchus cja-miR-542-3p mature miRNA
• Sequence: 47 - UUGUGACAGAUUGAUAACUGA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596