miRBase entry: cja-mir-548x

Stem-loop cja-mir-548x


Accession
MI0032110
Description
Callithrix jacchus cja-mir-548x precursor miRNA


Sequence

39 reads, 4.0 reads per million, 1 experiments
gaaaaggaaauauuagguuggugcAAAAGUAAUUGCGAGUUUUACCauuaaaaguaauuaaaaguaauggcaaagcaugcaauuacuuuugcaccaaugcaauagauucuaaguc
....((((..((((..(((((((((((((((((((((.(((((.((((((..............)))))).))))).)))))))))))))))))))))..))))..)))).....

Structure
-gaaa    aa    ag                     A     A      aaagua 
     agga  uauu  guuggugcAAAAGUAAUUGCG GUUUU CCauua      a
     ||||  ||||  ||||||||||||||||||||| ||||| ||||||       
     ucuu  auaa  uaaccacguuuucauuaacgu cgaaa gguaau      u
cugaa    ag    cg                     a     c      gaaaau 


Annotation confidence Not enough data
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Genome context
ref|NC_071443.1|: 78545105-78545219 [+]

Database links

Mature cja-miR-548x-5p

Accession MIMAT0039577
Description Callithrix jacchus cja-miR-548x-5p mature miRNA
Sequence 25 - AAAAGUAAUUGCGAGUUUUACC - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857