Stem-loop cja-mir-499b

Accession

MI0032116

Description

Callithrix jacchus cja-mir-499b precursor miRNA

Sequence

155 reads, 15.0 reads per million, 1 experiments

gcguagggacgggaagcagCACAGACUUGCUGUGAUGUUCacguggagaggaguUAAACAUCACUGCAAGUCUUAAcggccgcccgcccaaggcgc
((.(.(((.((((..((.....((((((((.((((((((.((.(......).))..)))))))).)))))))).....))..))))))).).))..

Structure

--  g a   a    aa  agCAC        U        -C  g gg 
  gc u ggg cggg  gc     AGACUUGC GUGAUGUU  ac u  a
  || | ||| ||||  ||     |||||||| ||||||||  || |   
  cg a ccc gccc  cg     UCUGAACG CACUACAA  ug g  g
cg  g a   -    gc  gcAAU        U        AU  a ga 

Annotation confidence High

Genome context

ref|NC_071446.1|: 2198081-2198176 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-499b

Mature cja-miR-499b-5p

• Accession: MIMAT0061588
• Description: Callithrix jacchus cja-miR-499b-5p mature miRNA
• Sequence: 20 - CACAGACUUGCUGUGAUGUUC - 40
• Evidence: experimental ; Illumina [1]

Mature cja-miR-499b-3p

• Accession: MIMAT0039581
• Description: Callithrix jacchus cja-miR-499b-3p mature miRNA
• Sequence: 55 - UAAACAUCACUGCAAGUCUUAA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857