Stem-loop cja-mir-3940

Accession

MI0032142

Description

Callithrix jacchus cja-mir-3940 precursor miRNA

Sequence

28 reads, 3.0 reads per million, 1 experiments

gaggagaagaucgaggugggcuggggagggcucugggggcuugggcucaCAGCCCGGAUCCCAGCCCACUcaucuuggccacucuccuu
(((((((((((.(((.((((((((((.(((((.((((........)))).)))))...))))))))))))))))).......)))))))

Structure

       -------    c   g          --a     c    ggc 
gaggaga       agau gag ugggcugggg   gggcu uggg   u
|||||||       |||| ||| ||||||||||   ||||| ||||    
uuccucu       ucua cUC ACCCGACCCU   CCCGA acuc   u
       caccggu    -   -          AGG     C    ggg 

Annotation confidence Not enough data

Genome context

ref|NC_071463.1|: 5678299-5678387 [-]

Mature cja-miR-3940-3p

• Accession: MIMAT0039605
• Description: Callithrix jacchus cja-miR-3940-3p mature miRNA
• Sequence: 50 - CAGCCCGGAUCCCAGCCCACU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857