miRBase entry: cja-mir-1b

Stem-loop cja-mir-1b

Accession

MI0032152

Description

Callithrix jacchus cja-mir-1b precursor miRNA

Sequence

ugcaguuuaauucucucuuggugguuuauugccuaccaaaaaUACAUACUUCUUUACAUUCCAuagcauuguauguucauaUGGGUACAUAAAGAAGUAUGUacucugaguagguauuacuaaguuguuagcugua
(((((((.(((.....(((((((((.....((((((((....((((((((((((((...((((((((((...))))...))))))....))))))))))))))...)).)))))))))))))))..))))))))))

Structure

       u   ucucu         uuauu      -  aaaa              -CAU      ---    u 
ugcaguu aau     cuugguggu     gccuac ca    UACAUACUUCUUUA    UCCAua   gcau  
||||||| |||     |||||||||     |||||| ||    ||||||||||||||    ||||||   |||| g
augucga uug     gaaucauua     uggaug gu    aUGUAUGAAGAAAU    GGGUau   ugua  
       -   ---uu         -----      a  -cuc              ACAU      acu    u

Annotation confidence Not enough data

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Genome context

chr13: 59037891-59038026 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cja-mir-1b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-1b-5p

Accession	MIMAT0039616
Description	Callithrix jacchus cja-miR-1b-5p mature miRNA
Sequence	43 - UACAUACUUCUUUACAUUCCA - 63
Evidence	experimental Illumina [1]

Mature cja-miR-1b-3p

Accession	MIMAT0039617
Description	Callithrix jacchus cja-miR-1b-3p mature miRNA
Sequence	82 - UGGGUACAUAAAGAAGUAUGU - 102
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857