miRBase entry: cja-mir-519c

Stem-loop cja-mir-519c

Accession

MI0032207

Description

Callithrix jacchus cja-mir-519c precursor miRNA

Sequence

ucucagccugugacgcUCUGGACAGAAGCGUGUUCUguugucugaaagaaauagaaaguguuucuguucaaaggauuacuguuugaga
((((((.(.((((..((.((((((((((((..(((((((.(((...))))))))))..)))))))))))).))..)))).).))))))

Structure

      c u    cg  C            UG       g   g 
ucucag c guga  cU UGGACAGAAGCG  UUCUguu ucu  
|||||| | ||||  || ||||||||||||  ||||||| ||| a
agaguu g cauu  ga acuugucuuugu  aagauaa aga  
      u u    ag  a            ga       -   a

Annotation confidence Not enough data

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Genome context

chr22: 44897030-44897117 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from cja-mir-519c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-519c

Accession	MIMAT0039666
Description	Callithrix jacchus cja-miR-519c mature miRNA
Sequence	17 - UCUGGACAGAAGCGUGUUCU - 36
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857