miRBase entry: cja-mir-3544

Stem-loop cja-mir-3544

Accession

MI0032236

Description

Callithrix jacchus cja-mir-3544 precursor miRNA

Sequence

gaggaggguccggggcugcgcgugguugaagggaugaAGAAAGGCAUCAUAUAGGAGCUGgauaacugugcaucaacuccuguaugaagccguucccaccccccaacuacugacuacggucgcaacccuccuc
(((((((((..(.(((((..((((((((..(((.((..(((.(((.(((((((((((...(((........)))..))))))))))).))).))).)))))..))))))).)....))))).).)))))))))

Structure

         cc g     --cg -       aa   a  aA   A   A           CUG   aac 
gaggagggu  g ggcug    c gugguug  ggg ug  GAA GGC UCAUAUAGGAG   gau   u
|||||||||  | |||||    | |||||||  ||| ||  ||| ||| |||||||||||   |||    
cuccuccca  c cuggc    g caucaac  ccc ac  cuu ccg aguauguccuc   cua   g
         -a g     auca u       cc   -  -c   g   a           -aa   cgu

Annotation confidence Not enough data

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Genome context

chr10: 126783378-126783510 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cja-mir-3544

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-3544

Accession	MIMAT0039692
Description	Callithrix jacchus cja-miR-3544 mature miRNA
Sequence	38 - AGAAAGGCAUCAUAUAGGAGCUG - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857