Stem-loop cja-mir-9940

Accession

MI0032255

Description

Callithrix jacchus cja-mir-9940 precursor miRNA

Sequence

14 reads, 1.0 reads per million, 1 experiments

gucauggagcucuauggccaaggcgggcagagugcaccugagccagugucuuccugcCAUGGCCAAGGCAGGUGGAGCGCaccugagccagcgucuuccugccauggccaaggugggcggagugcaccugagccagugucaugcugccaugcccaaggugaguggagugcaccugau
((((.((.(((((((.(((..(((((((((.(((.(((((.(((((((((((((((((.((((((.((((((.(((.(((..........)))))).)))))).)))))).))))))..))).))).))).))))).))))).))))).))))...)))..)))))))...))))))

Structure

    u  --a       -g   -aa    -     a   c  -   a  -   -   -   --      A      A      U   G   accu 
guca gg   gcucuau  gcc   ggcg ggcag gug ac cug gc cag ugu cuu  ccugcC UGGCCA GGCAGG GGA CGC    g
|||| ||   |||||||  |||   |||| ||||| ||| || ||| || ||| ||| |||  |||||| |||||| |||||| ||| |||     
uagu cc   ugaggug  ugg   ccgu ccguc uac ug gac cg guc acg gag  gggugg accggu ccgucc ucu gcg    a
    -  acg       ag   aac    a     g   -  u   -  a   c   u   gc      a      a      u   -   accg 

Annotation confidence Not enough data

Genome context

ref|NC_071446.1|: 59921763-59921939 [+]

Mature cja-miR-9940-5p

• Accession: MIMAT0039710
• Description: Callithrix jacchus cja-miR-9940-5p mature miRNA
• Sequence: 58 - CAUGGCCAAGGCAGGUGGAGCGC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857