miRBase entry: cja-mir-9945

Stem-loop cja-mir-9945

Accession

MI0032262

Description

Callithrix jacchus cja-mir-9945 precursor miRNA

Sequence

ggggaggagguccaugguggaggagaggguuagugugacccauuggugggggagggauuggugugacaagggcuccugcauccauguguCUGUCCACCUGAGCCCUCCUCCacucgugugucacucagagccucuuuucaccuacauagccucccc
(((((((........((((.((((((((.((.(.(((((.(((.((((((((((((...((((.((((..(((.(.((....)).).)))))))))))....)))))))))))).))).))))).).)).)))))))))))).......)))))))

Structure

       agguccau    g        g  a u     c   u            -auu    u    ag   u c  c 
ggggagg        ggug aggagagg uu g gugac cau ggugggggaggg    ggug gaca  ggc c ug a
|||||||        |||| |||||||| || | ||||| ||| ||||||||||||    |||| ||||  ||| | ||  
ccccucc        ccac uuuucucc ag c cacug gug ucaCCUCCUCCC    CCAC CUGU  Cug g ac u
       -gauacau    -        g  a u     u   c            GAGU    -    --   u u  c

Annotation confidence Not enough data

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Genome context

chr10: 126782370-126782525 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cja-mir-9945

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-9945

Accession	MIMAT0039717
Description	Callithrix jacchus cja-miR-9945 mature miRNA
Sequence	90 - CUGUCCACCUGAGCCCUCCUCC - 111
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857