Stem-loop cja-mir-9946

Accession

MI0032263

Description

Callithrix jacchus cja-mir-9946 precursor miRNA

Sequence

ucgaGAGAGAAUAUUUAAUUCCACCcagggucuuccuaaugcuguuugagugaugcaaaguagagaaguuacuguugaagguauuaaaucauucucugcuugg
.((((((((((((((((((.((...(((...(((((((.(((.(((.....))))))...))).))))...))).....)).))))))).))))))).)))).

Structure

u    -       -       U  --ACC   ggu    -   --a   u   u 
 cgaG AGAGAAU AUUUAAU CC     cag   cuuc cua   ugc guu g
 |||| ||||||| ||||||| ||     |||   |||| |||   ||| ||| a
 guuc ucucuua uaaauua gg     guc   gaag gau   acg uag g
g    g       c       u  aaguu   auu    a   gaa   -   u 

Annotation confidence Not enough data

Genome context

chr5: 144654296-144654398 [-]

Mature cja-miR-9946

• Accession: MIMAT0039718
• Description: Callithrix jacchus cja-miR-9946 mature miRNA
• Sequence: 5 - GAGAGAAUAUUUAAUUCCACC - 25
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857