Stem-loop cja-mir-942

Accession

MI0032265

Description

Callithrix jacchus cja-mir-942 precursor miRNA

Sequence

2432 reads, 233.0 reads per million, 1 experiments

ucacuuucuucagcaaacauuaggagaggaccUUCUCUGUUUCGGCCACGUGUGUacucacagccccucaCACACGGCCAAAACAGAGAAAGuacucuucuaagauuugcuucacuggaguguga
((((.((((..((((((..(((((((((.((.((((((((((.((((..((((((..............)))))))))).)))))))))).)).)))))))))..)))))).....)))).))))

Structure

    u    ---uc      ca         g  c          C    AC      acucac 
ucac uucu     agcaaa  uuaggagag ac UUCUCUGUUU GGCC  GUGUGU      a
|||| ||||     ||||||  ||||||||| || |||||||||| ||||  ||||||       
agug gagg     ucguuu  aaucuucuc uG AAGAGACAAA CCGG  CACACa      g
    u    ucacu      ag         a  A          A    --      cucccc 

Annotation confidence High

Genome context

ref|NC_071448.1|: 152362380-152362504 [+]

Mature cja-miR-942-5p

• Accession: MIMAT0039720
• Description: Callithrix jacchus cja-miR-942-5p mature miRNA
• Sequence: 33 - UUCUCUGUUUCGGCCACGUGUGU - 55
• Evidence: experimental ; Illumina [1]

Mature cja-miR-942-3p

• Accession: MIMAT0061593
• Description: Callithrix jacchus cja-miR-942-3p mature miRNA
• Sequence: 71 - CACACGGCCAAAACAGAGAAAG - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857