miRBase entry: cja-mir-9960

Stem-loop cja-mir-9960

Accession

MI0032282

Description

Callithrix jacchus cja-mir-9960 precursor miRNA

Sequence

gugucaguaugacugcauuaccuagacaauuccaucccaagugggcacuggauauaaagauacgUCCACAGUGGUGGAGUUGUUcagguggugcagcagcac
((((.....((.(((((((((((.((((((((((((....((((((.................))))))...)))))))))))).)))))))))))))))))

Structure

    cagua  a           a            ccaa      acuggau 
gugu     ug cugcauuaccu gacaauuccauc    gugggc       a
||||     || ||||||||||| ||||||||||||    ||||||       u
cacg     ac gacguggugga UUGUUGAGGUGG    CACCUg       a
    -----  -           c            -UGA      cauagaa

Annotation confidence Not enough data

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Genome context

chrX: 138906307-138906408 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cja-mir-9960

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-9960

Accession	MIMAT0039735
Description	Callithrix jacchus cja-miR-9960 mature miRNA
Sequence	65 - UCCACAGUGGUGGAGUUGUU - 84
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857