Stem-loop pal-mir-1-1

Accession

MI0032317

Description

Pteropus alecto pal-mir-1-1 precursor miRNA

Sequence

ACAUACUUCUUUAUGUACCCAUAugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAU
((((((((((((((((..(((((..(........)..))))).))))))))))))))))..

Structure

--                AC     ug aca 
  ACAUACUUCUUUAUGU  CCAUA  a   u
  ||||||||||||||||  |||||  |    
  UGUAUGAAGAAAUGUA  GGUau  u   a
UA                -A     cg aac 

Annotation confidence Not enough data

Genome context

KB031041.1: 24722761-24722821 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pal-mir-1-1

Mature pal-miR-1-5p

• Accession: MIMAT0039767
• Description: Pteropus alecto pal-miR-1-5p mature miRNA
• Sequence: 1 - ACAUACUUCUUUAUGUACCCAUA - 23
• Evidence: experimental ; Illumina [1]

Mature pal-miR-1-3p

• Accession: MIMAT0039768
• Description: Pteropus alecto pal-miR-1-3p mature miRNA
• Sequence: 40 - UGGAAUGUAAAGAAGUAUGUAU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682