Stem-loop pal-mir-1-2

Accession

MI0032318

Description

Pteropus alecto pal-mir-1-2 precursor miRNA

Sequence

ACAUACUUCUUUAUAUGCCCAUaugaccugcuaagcuaUGGAAUGUAAAGAAGUAUGUAU
((((((((((((((((..(((((.............))))).))))))))))))))))..

Structure

--                GC     ugacc 
  ACAUACUUCUUUAUAU  CCAUa     u
  ||||||||||||||||  |||||     g
  UGUAUGAAGAAAUGUA  GGUau     c
UA                -A     cgaau 

Annotation confidence Not enough data

Genome context

KB031072.1: 39924080-39924139 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pal-mir-1-2

Mature pal-miR-1-3p

• Accession: MIMAT0039768
• Description: Pteropus alecto pal-miR-1-3p mature miRNA
• Sequence: 39 - UGGAAUGUAAAGAAGUAUGUAU - 60
• Evidence: experimental ; Illumina [1]

Mature pal-miR-1-2-5p

• Accession: MIMAT0039769
• Description: Pteropus alecto pal-miR-1-2-5p mature miRNA
• Sequence: 1 - ACAUACUUCUUUAUAUGCCCAU - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682