Stem-loop pal-mir-3958

Accession

MI0032339

Description

Pteropus alecto pal-mir-3958 precursor miRNA

Sequence

AGGUUGUCCGUGAUGUAUUUGCUuuguuuauggcAGAUAUUGCACGGUUGAUCUCU
(((((..(((((..(((((((((........)))))))))..)))))..)))))..

Structure

--     GU     AU         uug 
  AGGUU  CCGUG  GUAUUUGCU   u
  |||||  |||||  |||||||||    
  UCUAG  GGCAC  UAUAGAcgg   u
UC     UU     GU         uau 

Annotation confidence Not enough data

Genome context

KB031153.1: 22080829-22080884 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from pal-mir-3958

Mature pal-miR-3958-5p

• Accession: MIMAT0039807
• Description: Pteropus alecto pal-miR-3958-5p mature miRNA
• Sequence: 1 - AGGUUGUCCGUGAUGUAUUUGCU - 23
• Evidence: experimental ; Illumina [1]

Mature pal-miR-3958-3p

• Accession: MIMAT0039808
• Description: Pteropus alecto pal-miR-3958-3p mature miRNA
• Sequence: 35 - AGAUAUUGCACGGUUGAUCUCU - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682