Stem-loop pal-mir-27b

Accession

MI0032340

Description

Pteropus alecto pal-mir-27b precursor miRNA

Sequence

AGAGCUUAGCUGAUUGGUGAACagugacugguuuccgcuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))..

Structure

--           G    G       ugac   u 
  AGAGCUUAGCU AUUG UGAACag    ugg  
  ||||||||||| |||| |||||||    ||| u
  UCUUGAAUCGG UGAC ACUUguu    gcc  
CG           -    -       --uc   u 

Annotation confidence Not enough data

Genome context

KB031011.1: 1518148-1518210 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pal-mir-27b

Mature pal-miR-27b-5p

• Accession: MIMAT0039809
• Description: Pteropus alecto pal-miR-27b-5p mature miRNA
• Sequence: 1 - AGAGCUUAGCUGAUUGGUGAAC - 22
• Evidence: experimental ; Illumina [1]

Mature pal-miR-27b-3p

• Accession: MIMAT0039810
• Description: Pteropus alecto pal-miR-27b-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCUGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682