Stem-loop pal-mir-221

Accession

MI0032357

Description

Pteropus alecto pal-mir-221 precursor miRNA

Sequence

ACCUGGCAUACAAUGUAGGUUUCuguguuuguuaggcaacAGCUACAUUGUCUGCUGGGUUU
((((((((.(((((((((....((((((((...)))).))))))))))))).))))))))..

Structure

--        U         GUUU    -    g 
  ACCUGGCA ACAAUGUAG    Cugu guuu  
  |||||||| |||||||||    |||| |||| u
  UGGGUCGU UGUUACAUC    GAca cgga  
UU        C         ----    a    u 

Annotation confidence Not enough data

Genome context

KB030414.1: 105229-105290 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pal-mir-221

Mature pal-miR-221-5p

• Accession: MIMAT0039842
• Description: Pteropus alecto pal-miR-221-5p mature miRNA
• Sequence: 1 - ACCUGGCAUACAAUGUAGGUUUC - 23
• Evidence: experimental ; Illumina [1]

Mature pal-miR-221-3p

• Accession: MIMAT0039843
• Description: Pteropus alecto pal-miR-221-3p mature miRNA
• Sequence: 41 - AGCUACAUUGUCUGCUGGGUUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682