Stem-loop pal-mir-27a

Accession

MI0032367

Description

Pteropus alecto pal-mir-27a precursor miRNA

Sequence

AGGGCUUAGCUGCUUGUGAGCAgggucugcaccaagucgugUUCACAGUGGCUAAGUUCCG
.(((((((((((((.(((((((.((.((......)))).))))))))))))))))))))..

Structure

-A             U       g  u  gc 
  GGGCUUAGCUGCU GUGAGCA gg cu  a
  ||||||||||||| ||||||| || ||   
  CUUGAAUCGGUGA CACUUgu cu ga  c
GC             -       g  -  ac 

Annotation confidence Not enough data

Genome context

KB030998.1: 907548-907608 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pal-mir-27a

Mature pal-miR-27a-5p

• Accession: MIMAT0039858
• Description: Pteropus alecto pal-miR-27a-5p mature miRNA
• Sequence: 1 - AGGGCUUAGCUGCUUGUGAGCA - 22
• Evidence: experimental ; Illumina [1]

Mature pal-miR-27a-3p

• Accession: MIMAT0039859
• Description: Pteropus alecto pal-miR-27a-3p mature miRNA
• Sequence: 42 - UUCACAGUGGCUAAGUUCCG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682