Stem-loop pal-mir-200b

Accession

MI0032370

Description

Pteropus alecto pal-mir-200b precursor miRNA

Sequence

CAUCUUACUGGGCAGCAUUGGauggagucuggucucUAAUACUGCCUGGUAAUGAUGAC
(((((((((((((((.((((((..((......)))))))).))))))))))).))))..

Structure

--    -           C      ug  gu 
  CAUC UUACUGGGCAG AUUGGa  ga  c
  |||| ||||||||||| ||||||  ||   
  GUAG AAUGGUCCGUC UAAUcu  cu  u
CA    U           A      --  gg 

Annotation confidence Not enough data

Genome context

KB030251.1: 244025-244083 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pal-mir-200b

Mature pal-miR-200b-5p

• Accession: MIMAT0039864
• Description: Pteropus alecto pal-miR-200b-5p mature miRNA
• Sequence: 1 - CAUCUUACUGGGCAGCAUUGG - 21
• Evidence: experimental ; Illumina [1]

Mature pal-miR-200b-3p

• Accession: MIMAT0039865
• Description: Pteropus alecto pal-miR-200b-3p mature miRNA
• Sequence: 37 - UAAUACUGCCUGGUAAUGAUGAC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682