Stem-loop pal-mir-200a

Accession

MI0032371

Description

Pteropus alecto pal-mir-200a precursor miRNA

Sequence

CAUCUUACCGGACAGUGCUGGAuuucucggcuugacucUAACACUGUCUGGUAACGAUGUU
(((((((((((((((((.((((..((.......)).)))).))))))))))))).))))..

Structure

--    -             C    uu  uc 
  CAUC UUACCGGACAGUG UGGA  uc  g
  |||| ||||||||||||| ||||  ||  g
  GUAG AAUGGUCUGUCAC AUcu  ag  c
UU    C             A    -c  uu 

Annotation confidence Not enough data

Genome context

KB030251.1: 244597-244657 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pal-mir-200a

Mature pal-miR-200a-5p

• Accession: MIMAT0039866
• Description: Pteropus alecto pal-miR-200a-5p mature miRNA
• Sequence: 1 - CAUCUUACCGGACAGUGCUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature pal-miR-200a-3p

• Accession: MIMAT0039867
• Description: Pteropus alecto pal-miR-200a-3p mature miRNA
• Sequence: 39 - UAACACUGUCUGGUAACGAUGUU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682