Stem-loop pal-mir-200c

Accession

MI0032396

Description

Pteropus alecto pal-mir-200c precursor miRNA

Sequence

CGUCUUACCCAGCAGUGUUUGggugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGA
((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))..

Structure

--    -      A        U   u   gg 
  CGUC UUACCC GCAGUGUU Ggg gcu  u
  |||| |||||| |||||||| ||| |||  u
  GUAG AAUGGG CGUCAUAA cuc uga  g
AG    U      C        U   -   gg 

Annotation confidence Not enough data

Genome context

KB030754.1: 13552801-13552863 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pal-mir-200c

Mature pal-miR-200c-5p

• Accession: MIMAT0039911
• Description: Pteropus alecto pal-miR-200c-5p mature miRNA
• Sequence: 1 - CGUCUUACCCAGCAGUGUUUG - 21
• Evidence: experimental ; Illumina [1]

Mature pal-miR-200c-3p

• Accession: MIMAT0039912
• Description: Pteropus alecto pal-miR-200c-3p mature miRNA
• Sequence: 41 - UAAUACUGCCGGGUAAUGAUGGA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682