Stem-loop pal-mir-506

Accession

MI0032407

Description

Pteropus alecto pal-mir-506 precursor miRNA

Literature search

1 open access papers mention pal-mir-506
(6 sentences)

Sequence

UACUCAGGAAGGCAUCGUUCAcauaacguagauaaauauaugAAUGGCACCUUUCUGAGUAGU
((((((((((((..(((((((.(((...........))).)))))))..))))))))))))..

Structure

--            CA       c   acgu 
  UACUCAGGAAGG  UCGUUCA aua    a
  ||||||||||||  ||||||| |||    g
  AUGAGUCUUUCC  GGUAAgu uau    a
UG            AC       a   aaau 

Annotation confidence Not enough data

Genome context

KB030676.1: 1628067-1628129 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pal-mir-506

Mature pal-miR-506-5p

• Accession: MIMAT0039933
• Description: Pteropus alecto pal-miR-506-5p mature miRNA
• Sequence: 1 - UACUCAGGAAGGCAUCGUUCA - 21
• Evidence: experimental ; Illumina [1]

Mature pal-miR-506-3p

• Accession: MIMAT0039934
• Description: Pteropus alecto pal-miR-506-3p mature miRNA
• Sequence: 43 - AAUGGCACCUUUCUGAGUAGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682