Stem-loop pal-mir-93

Accession

MI0032409

Description

Pteropus alecto pal-mir-93 precursor miRNA

Sequence

CAAAGUGCUGUUCGUGCAGGUAGugugauuaccugaccuACUGCUGAGCUAGCACUUCCCG
..((((((((((((.((((.(((.((.(.....).)))))))))))))).)))))))....

Structure

--CA       -     U    G   u  g u 
    AAGUGCU GUUCG GCAG UAG gu a u
    ||||||| ||||| |||| ||| || | a
    UUCACGA CGAGU CGUC Auc ca u c
GCCC       U     -    -   -  g c 

Annotation confidence Not enough data

Genome context

KB030994.1: 9352206-9352266 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pal-mir-93

Mature pal-miR-93-5p

• Accession: MIMAT0039937
• Description: Pteropus alecto pal-miR-93-5p mature miRNA
• Sequence: 1 - CAAAGUGCUGUUCGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature pal-miR-93-3p

• Accession: MIMAT0039938
• Description: Pteropus alecto pal-miR-93-3p mature miRNA
• Sequence: 40 - ACUGCUGAGCUAGCACUUCCCG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682