Stem-loop pal-mir-449a

Accession

MI0032410

Description

Pteropus alecto pal-mir-449a precursor miRNA

Sequence

UGGCAGUGUAUUGUUAGCUGGUugaauauaugaauggcauCAGCUAACAUGCAACUGCUAU
(((((((((((.((((((((((...((......))...)))))))))))))).))))))).

Structure

-       -    U          uga  au 
 UGGCAGU GUAU GUUAGCUGGU   au  a
 ||||||| |||| ||||||||||   ||   
 AUCGUCA CGUA CAAUCGACua   ua  u
U       A    -          cgg  ag 

Annotation confidence Not enough data

Genome context

KB030662.1: 5389917-5389977 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pal-mir-449a

Mature pal-miR-449a-5p

• Accession: MIMAT0039939
• Description: Pteropus alecto pal-miR-449a-5p mature miRNA
• Sequence: 1 - UGGCAGUGUAUUGUUAGCUGGU - 22
• Evidence: experimental ; Illumina [1]

Mature pal-miR-449a-3p

• Accession: MIMAT0039940
• Description: Pteropus alecto pal-miR-449a-3p mature miRNA
• Sequence: 41 - CAGCUAACAUGCAACUGCUAU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682