Stem-loop pal-mir-509b

Accession

MI0032419

Description

Pteropus alecto pal-mir-509b precursor miRNA

Sequence

UGCUCCAAAGACGGCAAUCAUGugucauaaagugUGAUUGACAGCUUUGAGAGUGG
.(((((((((....(((((((((........)))))))))....))))).))))..

Structure

-U    -     ACGG         guc 
  GCUC CAAAG    CAAUCAUGu   a
  |||| |||||    |||||||||    
  UGAG GUUUC    GUUAGUgug   u
GG    A     GACA         aaa 

Annotation confidence Not enough data

Genome context

KB030676.1: 1612733-1612788 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pal-mir-509b

Mature pal-miR-509b-5p

• Accession: MIMAT0039955
• Description: Pteropus alecto pal-miR-509b-5p mature miRNA
• Sequence: 1 - UGCUCCAAAGACGGCAAUCAUG - 22
• Evidence: experimental ; Illumina [1]

Mature pal-miR-509b-3p

• Accession: MIMAT0039956
• Description: Pteropus alecto pal-miR-509b-3p mature miRNA
• Sequence: 35 - UGAUUGACAGCUUUGAGAGUGG - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682