Stem-loop pal-mir-17

Accession

MI0032421

Description

Pteropus alecto pal-mir-17 precursor miRNA

Sequence

138 reads, 41.0 reads per million, 1 experiments

CAAAGUGCUUACAGUGCAGGUAGUgauaugugcaucuACUGCAGUGAAGGCACUUGUAGc
..((((((((.((.(((((.(((((.......)).)))))))).)).)))))))).....

Structure

---CA        A  G     G   -  au 
     AAGUGCUU CA UGCAG UAG Ug  a
     |||||||| || ||||| ||| ||  u
     UUCACGGA GU ACGUC Auc ac  g
cGAUG        A  G     -   u  gu 

Annotation confidence High

Genome context

KB030714.1: 19601270-19601329 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from pal-mir-17

Mature pal-miR-17-5p

• Accession: MIMAT0039959
• Description: Pteropus alecto pal-miR-17-5p mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUAGU - 24
• Evidence: experimental ; Illumina [1]

Mature pal-miR-17-3p

• Accession: MIMAT0039960
• Description: Pteropus alecto pal-miR-17-3p mature miRNA
• Sequence: 38 - ACUGCAGUGAAGGCACUUGUAG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682