Stem-loop pal-mir-20b

Accession

MI0032444

Description

Pteropus alecto pal-mir-20b precursor miRNA

Sequence

CAAAGUGCUCAUAGUGCAGGUAGuuuuggcauuacucuACUGUAGUGUGGGCACUUCC
..(((((((((((.(((((..(((.........)))...))))).)))))))))))..

Structure

CA           G     -GU   uuu 
  AAGUGCUCAUA UGCAG   AGu   g
  ||||||||||| |||||   |||   g
  UUCACGGGUGU AUGUC   uca   c
CC           G     Auc   uua 

Annotation confidence Not enough data

Genome context

KB031071.1: 682795-682852 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from pal-mir-20b

Mature pal-miR-20b-5p

• Accession: MIMAT0040005
• Description: Pteropus alecto pal-miR-20b-5p mature miRNA
• Sequence: 1 - CAAAGUGCUCAUAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature pal-miR-20b-3p

• Accession: MIMAT0040006
• Description: Pteropus alecto pal-miR-20b-3p mature miRNA
• Sequence: 39 - ACUGUAGUGUGGGCACUUCC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682