Stem-loop pal-mir-224

Accession

MI0032456

Description

Pteropus alecto pal-mir-224 precursor miRNA

Sequence

CAAGUCACUAGUGGUUCCAUUUAGuagauggcugugcauuguuucaAAAUGGUACCCUAGUGACUACA
..(((((((((.(((.((((((.(..((((......))))....).)))))).))))))))))))...

Structure

-CA         U   U      A --ua    gc 
   AGUCACUAG GGU CCAUUU G    gaug  u
   ||||||||| ||| |||||| |    ||||   
   UCAGUGAUC CCA GGUAAA c    uuac  g
ACA         -   U      a uuug    gu 

Annotation confidence Not enough data

Genome context

KB030305.1: 8471-8538 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pal-mir-224

Mature pal-miR-224-5p

• Accession: MIMAT0040027
• Description: Pteropus alecto pal-miR-224-5p mature miRNA
• Sequence: 1 - CAAGUCACUAGUGGUUCCAUUUAG - 24
• Evidence: experimental ; Illumina [1]

Mature pal-miR-224-3p

• Accession: MIMAT0040028
• Description: Pteropus alecto pal-miR-224-3p mature miRNA
• Sequence: 47 - AAAUGGUACCCUAGUGACUACA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682