Stem-loop pal-mir-338

Accession

MI0032460

Description

Pteropus alecto pal-mir-338 precursor miRNA

Literature search

1 open access papers mention pal-mir-338
(1 sentences)

Sequence

AACAACAUCCUGGUGCUGAGUgaugacacacgcaacUCCAGCAUCAGUGAUUUUGUUGA
(((((.(((((((((((((((..((.....))..))).))))))))).))).)))))..

Structure

--     C   -         -   ga  a 
  AACAA AUC CUGGUGCUG AGU  ug c
  ||||| ||| ||||||||| |||  || a
  UUGUU UAG GACUACGAC Uca  gc c
AG     U   U         C   ac  a 

Annotation confidence Not enough data

Genome context

KB030661.1: 1301099-1301157 [+]

Mature pal-miR-338-5p

• Accession: MIMAT0040035
• Description: Pteropus alecto pal-miR-338-5p mature miRNA
• Sequence: 1 - AACAACAUCCUGGUGCUGAGU - 21
• Evidence: experimental ; Illumina [1]

Mature pal-miR-338-3p

• Accession: MIMAT0040036
• Description: Pteropus alecto pal-miR-338-3p mature miRNA
• Sequence: 37 - UCCAGCAUCAGUGAUUUUGUUGA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682