Stem-loop pal-mir-9990

Accession

MI0032473

Description

Pteropus alecto pal-mir-9990 precursor miRNA

Sequence

UUCCCAGGAAUGUGCCUGUUCACuucuacuacauguUAACAGGCAUUUCUGAGGUGA
..(((((((..(((((((((.((...........)).)))))))))))))).))...

Structure

-UU  -     AU         C  uucu 
   CC CAGGA  GUGCCUGUU AC    a
   || |||||  ||||||||| ||    c
   GG GUCUU  UACGGACAA ug    u
AGU  A     --         U  uaca 

Annotation confidence Not enough data

Genome context

KB032509.1: 9745-9801 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pal-mir-9990

Mature pal-miR-9990-5p

• Accession: MIMAT0040061
• Description: Pteropus alecto pal-miR-9990-5p mature miRNA
• Sequence: 1 - UUCCCAGGAAUGUGCCUGUUCAC - 23
• Evidence: experimental ; Illumina [1]

Mature pal-miR-9990-3p

• Accession: MIMAT0040062
• Description: Pteropus alecto pal-miR-9990-3p mature miRNA
• Sequence: 37 - UAACAGGCAUUUCUGAGGUGA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682