Stem-loop pal-mir-181d

Accession

MI0032515

Description

Pteropus alecto pal-mir-181d precursor miRNA

Sequence

AACAUUCAUUGUUGUCGGUGGGUUgugaagauggaggccagaCCCACCGAGGGAUGAAUGUCAC
.(((((((((....((((((((((.......(((...)))))))))))))..)))))))))...

Structure

--A         GUUG          gugaaga   a 
   ACAUUCAUU    UCGGUGGGUU       ugg  
   |||||||||    ||||||||||       ||| g
   UGUAAGUAG    AGCCACCCag       acc  
CAC         --GG          -------   g 

Annotation confidence Not enough data

Genome context

KB030998.1: 940397-940460 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pal-mir-181d

Mature pal-miR-181d-5p

• Accession: MIMAT0040142
• Description: Pteropus alecto pal-miR-181d-5p mature miRNA
• Sequence: 1 - AACAUUCAUUGUUGUCGGUGGGUU - 24
• Evidence: experimental ; Illumina [1]

Mature pal-miR-181d-3p

• Accession: MIMAT0040143
• Description: Pteropus alecto pal-miR-181d-3p mature miRNA
• Sequence: 43 - CCCACCGAGGGAUGAAUGUCAC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682