Stem-loop pal-mir-138-2

Accession

MI0032521

Description

Pteropus alecto pal-mir-138-2 precursor miRNA

Sequence

AGCUGGUGUUGUGAAUCAGGCCGacgggcagcgcauccucuuacccgGCUAUUUCACGACACCAGGGUU
..(((((((((((((...(((((..((..((.(....).))..)))))))..)))))))))))))....

Structure

--AG             UCA     ac  gc  c c 
    CUGGUGUUGUGAA   GGCCG  gg  ag g a
    |||||||||||||   |||||  ||  || |  
    GACCACAGCACUU   UCGgc  cc  uc c u
UUGG             -UA     --  au  u c 

Annotation confidence Not enough data

Genome context

KB030537.1: 7115880-7115948 [+]

Mature pal-miR-138-5p

• Accession: MIMAT0039947
• Description: Pteropus alecto pal-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
• Evidence: experimental ; Illumina [1]

Mature pal-miR-138-2-3p

• Accession: MIMAT0040153
• Description: Pteropus alecto pal-miR-138-2-3p mature miRNA
• Sequence: 48 - GCUAUUUCACGACACCAGGGUU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682