Stem-loop pal-mir-542

Accession

MI0032538

Description

Pteropus alecto pal-mir-542 precursor miRNA

Sequence

UCGGGGAUCAUCAUGUCACGAGagaccauugugcacuUGUGACAGAUUGAUAACUGAAA
((((..((((...(((((((((.(((....)).).)))))))))...))))..))))..

Structure

--    GG    UCA         a -  c 
  UCGG  AUCA   UGUCACGAG g ac a
  ||||  ||||   ||||||||| | ||  
  AGUC  UAGU   ACAGUGUuc c ug u
AA    AA    UAG         a g  u 

Annotation confidence Not enough data

Genome context

KB031071.1: 439300-439358 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from pal-mir-542

Mature pal-miR-542-5p

• Accession: MIMAT0040183
• Description: Pteropus alecto pal-miR-542-5p mature miRNA
• Sequence: 1 - UCGGGGAUCAUCAUGUCACGAG - 22
• Evidence: experimental ; Illumina [1]

Mature pal-miR-542-3p

• Accession: MIMAT0040184
• Description: Pteropus alecto pal-miR-542-3p mature miRNA
• Sequence: 38 - UGUGACAGAUUGAUAACUGAAA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682