Stem-loop pal-mir-3959

Accession

MI0032554

Description

Pteropus alecto pal-mir-3959 precursor miRNA

Sequence

GGUUGAUCAGAGAACAUACAUUuuaucaaugaUGUAUGUCAACUGAUCCACAGU
.((.((((((...(((((((((........)))))))))...)))))).))...

Structure

--G  U      AGA         uua 
   GU GAUCAG   ACAUACAUU   u
   || ||||||   |||||||||    
   CA CUAGUC   UGUAUGUag   c
UGA  C      AAC         uaa 

Annotation confidence Not enough data

Genome context

KB031153.1: 22093968-22094021 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from pal-mir-3959

Mature pal-miR-3959-5p

• Accession: MIMAT0040213
• Description: Pteropus alecto pal-miR-3959-5p mature miRNA
• Sequence: 1 - GGUUGAUCAGAGAACAUACAUU - 22
• Evidence: experimental ; Illumina [1]

Mature pal-miR-3959-3p

• Accession: MIMAT0040214
• Description: Pteropus alecto pal-miR-3959-3p mature miRNA
• Sequence: 33 - UGUAUGUCAACUGAUCCACAGU - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682