Stem-loop pal-mir-543

Accession

MI0032557

Description

Pteropus alecto pal-mir-543 precursor miRNA

Sequence

GAAGUUGCCCGUGUCUUUUUCGcuuuauuugugacgAAACAUUCGCGGUGCACUUCUU
(((((.(((((((....((((((.........).)))))....))))).)))))))..

Structure

--     U  -     UCUU     - uuu 
  GAAGU GC CCGUG    UUUCG c   a
  ||||| || |||||    ||||| |   u
  CUUCA CG GGCGC    AAAgc g   u
UU     -  U     UUAC     a ugu 

Annotation confidence Not enough data

Genome context

KB031153.1: 22077011-22077068 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from pal-mir-543

Mature pal-miR-543-5p

• Accession: MIMAT0040218
• Description: Pteropus alecto pal-miR-543-5p mature miRNA
• Sequence: 1 - GAAGUUGCCCGUGUCUUUUUCG - 22
• Evidence: experimental ; Illumina [1]

Mature pal-miR-543-3p

• Accession: MIMAT0040219
• Description: Pteropus alecto pal-miR-543-3p mature miRNA
• Sequence: 37 - AAACAUUCGCGGUGCACUUCUU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682