Stem-loop pal-mir-196c

Accession

MI0032560

Description

Pteropus alecto pal-mir-196c precursor miRNA

Sequence

UAGGUAGUUUCUUGUUGUUGGGccucaauuucugaacaCAACGACAUUAAACCACCCGAC
..(((.((((..((((((((....(((.....)))...))))))))..)))).)))....

Structure

--UA   A    CU        GGcc   a 
    GGU GUUU  UGUUGUUG    uca u
    ||| ||||  ||||||||    ||| u
    CCA CAAA  ACAGCAAC    agu u
CAGC   C    UU        -aca   c 

Annotation confidence Not enough data

Genome context

KB031150.1: 4286448-4286507 [-]

Mature pal-miR-196c-5p

• Accession: MIMAT0040224
• Description: Pteropus alecto pal-miR-196c-5p mature miRNA
• Sequence: 1 - UAGGUAGUUUCUUGUUGUUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature pal-miR-196c-3p

• Accession: MIMAT0040225
• Description: Pteropus alecto pal-miR-196c-3p mature miRNA
• Sequence: 39 - CAACGACAUUAAACCACCCGAC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682