Stem-loop pal-mir-889

Accession

MI0032561

Description

Pteropus alecto pal-mir-889 precursor miRNA

Sequence

AAUGGCUGUCCGUAGUAUGGUCucuauauuuacagugaUUAAUAUCGGACAACCAUUGU
(((((.((((((..((.(((((.((........)).)))))))..)))))).)))))..

Structure

--     C      UA  A     u  aua 
  AAUGG UGUCCG  GU UGGUC cu   u
  ||||| ||||||  || ||||| ||    
  UUACC ACAGGC  UA AUUag ga   u
UG     A      UA  -     u  cau 

Annotation confidence Not enough data

Genome context

KB031153.1: 22090283-22090341 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from pal-mir-889

Mature pal-miR-889-5p

• Accession: MIMAT0040226
• Description: Pteropus alecto pal-miR-889-5p mature miRNA
• Sequence: 1 - AAUGGCUGUCCGUAGUAUGGUC - 22
• Evidence: experimental ; Illumina [1]

Mature pal-miR-889-3p

• Accession: MIMAT0040227
• Description: Pteropus alecto pal-miR-889-3p mature miRNA
• Sequence: 39 - UUAAUAUCGGACAACCAUUGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682