Stem-loop pal-mir-10001

Accession

MI0032583

Description

Pteropus alecto pal-mir-10001 precursor miRNA

Sequence

GAGGGCGGGCGGGGCCGGGggcuccucccugcccgcCGCCGCCACCUCCCUCCC
(((((.(((.(((((.(.((((........)))).).))).)).))))))))..

Structure

--     C   C  -   C G    ucc 
  GAGGG GGG GG GGC G Gggc   u
  ||||| ||| || ||| | ||||    
  CUCCC UCC CC CCG c cccg   c
CC     -   A  G   C g    ucc 

Annotation confidence Not enough data

Genome context

KB031155.1: 2907040-2907093 [-]

Mature pal-miR-10001-5p

• Accession: MIMAT0040269
• Description: Pteropus alecto pal-miR-10001-5p mature miRNA
• Sequence: 1 - GAGGGCGGGCGGGGCCGGG - 19
• Evidence: experimental ; Illumina [1]

Mature pal-miR-10001-3p

• Accession: MIMAT0040270
• Description: Pteropus alecto pal-miR-10001-3p mature miRNA
• Sequence: 37 - CGCCGCCACCUCCCUCCC - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682