Stem-loop pal-mir-541

Accession

MI0032585

Description

Pteropus alecto pal-mir-541 precursor miRNA

Literature search

1 open access papers mention pal-mir-541
(4 sentences)

Sequence

AAGGGGUUCUGCCGUCGGUCccacugcaaaguucgcagagugggaggUGGGCGCAGAAUCCCGACU
..((((((((((.(((..(((((((((.......))..)))))))....)))))))))))))....

Structure

--AA          C   --GG       --  aa 
    GGGGUUCUGC GUC    UCccacu  gc  a
    |||||||||| |||    |||||||  ||  g
    CCCUAAGACG CGG    aggguga  cg  u
UCAG          -   GUgg       ga  cu 

Annotation confidence Not enough data

Genome context

KB031153.1: 22106842-22106907 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from pal-mir-541

Mature pal-miR-541-5p

• Accession: MIMAT0040273
• Description: Pteropus alecto pal-miR-541-5p mature miRNA
• Sequence: 1 - AAGGGGUUCUGCCGUCGGUC - 20
• Evidence: experimental ; Illumina [1]

Mature pal-miR-541-3p

• Accession: MIMAT0040274
• Description: Pteropus alecto pal-miR-541-3p mature miRNA
• Sequence: 48 - UGGGCGCAGAAUCCCGACU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682