Stem-loop pal-mir-154b

Accession

MI0032586

Description

Pteropus alecto pal-mir-154b precursor miRNA

Sequence

AGAGGUCUCCCAUGAUGCGUUCAcuuuguuuuuugaugAAUCAUACAUGGUUGACCUUUUU
.((((((..((((((((.((((((..........).)))))))).)))))..))))))...

Structure

--A      UC     -   C     - uuug 
   GAGGUC  CCAUG AUG GUUCA c    u
   ||||||  ||||| ||| ||||| |     
   UUCCAG  GGUAC UAC UAAgu g    u
UUU      UU     A   -     a uuuu 

Annotation confidence Not enough data

Genome context

KB031153.1: 22102337-22102397 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from pal-mir-154b

Mature pal-miR-154b-5p

• Accession: MIMAT0040275
• Description: Pteropus alecto pal-miR-154b-5p mature miRNA
• Sequence: 1 - AGAGGUCUCCCAUGAUGCGUUCA - 23
• Evidence: experimental ; Illumina [1]

Mature pal-miR-154b-3p

• Accession: MIMAT0040276
• Description: Pteropus alecto pal-miR-154b-3p mature miRNA
• Sequence: 39 - AAUCAUACAUGGUUGACCUUUUU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682