Stem-loop pal-mir-433

Accession

MI0032599

Description

Pteropus alecto pal-mir-433 precursor miRNA

Sequence

UGCGGUGAGCCUGUCAUCGUUCagagaggccagguccuccuuguccagaaggAUCAUGAUGGGCUCCUCGGUGU
..(((.(((((((((((.((((.....(((.(((....))).))).....)))).))))))))))).)))....

Structure

--UG   U           C    agaga   c   u 
    CGG GAGCCUGUCAU GUUC     ggc agg c
    ||| ||||||||||| ||||     ||| |||  
    GCU CUCGGGUAGUA UAgg     cug ucc c
UGUG   C           C    aagac   u   u 

Annotation confidence Not enough data

Genome context

KB031153.1: 21954516-21954589 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from pal-mir-433

Mature pal-miR-433-5p

• Accession: MIMAT0040298
• Description: Pteropus alecto pal-miR-433-5p mature miRNA
• Sequence: 1 - UGCGGUGAGCCUGUCAUCGUUC - 22
• Evidence: experimental ; Illumina [1]

Mature pal-miR-433-3p

• Accession: MIMAT0040299
• Description: Pteropus alecto pal-miR-433-3p mature miRNA
• Sequence: 53 - AUCAUGAUGGGCUCCUCGGUGU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682