Stem-loop pal-mir-188

Accession

MI0032623

Description

Pteropus alecto pal-mir-188 precursor miRNA

Sequence

CAUCCCUUGCAUGGUGGAGGGugcacuugcugaaaacccCUCCCACAUGCAGGGUUUGCA
((..(((((((((..((((((................))))))..)))))))))..))..

Structure

--  UC         GU      ugcacuu 
  CA  CCUUGCAUG  GGAGGG       g
  ||  |||||||||  ||||||        
  GU  GGGACGUAC  CCUCcc       c
AC  UU         AC      caaaagu 

Annotation confidence Not enough data

Genome context

KB030674.1: 313435-313494 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from pal-mir-188

Mature pal-miR-188-5p

• Accession: MIMAT0040345
• Description: Pteropus alecto pal-miR-188-5p mature miRNA
• Sequence: 1 - CAUCCCUUGCAUGGUGGAGGG - 21
• Evidence: experimental ; Illumina [1]

Mature pal-miR-188-3p

• Accession: MIMAT0040346
• Description: Pteropus alecto pal-miR-188-3p mature miRNA
• Sequence: 40 - CUCCCACAUGCAGGGUUUGCA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682