Stem-loop pal-mir-1839

Accession

MI0032650

Description

Pteropus alecto pal-mir-1839 precursor miRNA

Sequence

UCGGGGGCCAUACUACGUAGCCUGGAgcaggugagggcaaggagagccagggcgAAGGGGCUAGUGUGGAAGAGC
.......(((((((....(((((...((.......(((.......)))...))....))))))))))))......

Structure

UCGGGGG       ACGU     -GGA  aggugag   aa 
       CCAUACU    AGCCU    gc       ggc  g
       |||||||    |||||    ||       |||  g
       GGUGUGA    UCGGG    cg       ccg  a
-CGAGAA       ----     GAAg  ----gga   ag 

Annotation confidence Not enough data

Genome context

KB030715.1: 5553771-5553845 [-]

Mature pal-miR-1839-5p

• Accession: MIMAT0040396
• Description: Pteropus alecto pal-miR-1839-5p mature miRNA
• Sequence: 1 - UCGGGGGCCAUACUACGUAGCCUGGA - 26
• Evidence: experimental ; Illumina [1]

Mature pal-miR-1839-3p

• Accession: MIMAT0040397
• Description: Pteropus alecto pal-miR-1839-3p mature miRNA
• Sequence: 55 - AAGGGGCUAGUGUGGAAGAGC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682